DGE between responders in IP
Results
All cells
single cell
sample level
## Warning: Removed 8659 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 129 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
major cell type level
## Warning: Removed 8659 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 129 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
cell subtype level
## Warning: Removed 9120 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 112 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 8095 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 215 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7312 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 74 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7443 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 184 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 8471 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 163 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 8324 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 61 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6191 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 33 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7808 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 148 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 8037 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 54 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 8571 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 60 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 8110 rows containing missing values (`geom_text_repel()`).
Pseudobulk
sample level
## Warning: Removed 15228 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 3 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
major cell type level
## Warning: Removed 15228 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 3 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
cell subtype level
## Warning: Removed 7373 rows containing missing values (`geom_point()`).## Warning: Removed 15192 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 9 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 1 rows containing missing values (`geom_point()`).## Warning: Removed 15210 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 13670 rows containing missing values (`geom_point()`).## Warning: Removed 14427 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 12973 rows containing missing values (`geom_point()`).## Warning: Removed 15209 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 1 rows containing missing values (`geom_point()`).## Warning: Removed 15172 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 13826 rows containing missing values (`geom_point()`).## Warning: Removed 15177 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 2 rows containing missing values (`geom_point()`).## Warning: Removed 15218 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 15232 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 1 rows containing missing values (`geom_point()`).
## Removed 15218 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 1 rows containing missing values (`geom_point()`).## Warning: Removed 15223 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 15208 rows containing missing values (`geom_text_repel()`).
CAR+ cells
single cell
sample level
## Warning: Removed 8724 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 180 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
major cell type level
## Warning: Removed 8724 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 180 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
cell subtype level
## Warning: Removed 9136 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 181 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 8156 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 180 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7475 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 108 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7726 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 209 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 8362 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 50 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 8518 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 169 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6768 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 61 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7920 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 192 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 8131 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 42 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 8604 rows containing missing values (`geom_text_repel()`).## Warning: ggrepel: 89 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 8306 rows containing missing values (`geom_text_repel()`).
Pseudobulk
sample level
## Warning: Removed 14881 rows containing missing values (`geom_text_repel()`).
major cell type level
## Warning: Removed 14881 rows containing missing values (`geom_text_repel()`).
cell subtype level
## Warning: Removed 8642 rows containing missing values (`geom_point()`).## Warning: Removed 14853 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 1 rows containing missing values (`geom_point()`).## Warning: Removed 14848 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 2 rows containing missing values (`geom_point()`).## Warning: Removed 13744 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 10936 rows containing missing values (`geom_point()`).## Warning: Removed 14845 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 1 rows containing missing values (`geom_point()`).## Warning: Removed 14841 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 12645 rows containing missing values (`geom_point()`).## Warning: Removed 14820 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 14852 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 1 rows containing missing values (`geom_point()`).## Warning: Removed 14890 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 14870 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 1155 rows containing missing values (`geom_point()`).## Warning: Removed 14878 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 14857 rows containing missing values (`geom_text_repel()`).